|   | ALIGNMENT LOCAL | 
Local sequence alignment
| Program name | Description | 
|---|---|
| matcher | Finds the best local alignments between two sequences | 
| seqmatchall | All-against-all comparison of a set of sequences | 
| supermatcher | Match large sequences against one or more other sequences | 
| water | Smith-Waterman local alignment | 
| wordfinder | Match large sequences against one or more other sequences | 
| wordmatch | Finds all exact matches of a given size between 2 sequences |