| Program name | Description | 
|---|---|
| getorf | Finds and extracts open reading frames (ORFs) | 
| marscan | Finds MAR/SAR sites in nucleic sequences | 
| plotorf | Plot potential open reading frames | 
| showorf | Pretty output of DNA translations | 
| sixpack | Display a DNA sequence with 6-frame translation and ORFs | 
| syco | Synonymous codon usage Gribskov statistic plot | 
| tcode | Fickett TESTCODE statistic to identify protein-coding DNA | 
| wobble | Wobble base plot |