pepnet
    Function
    Description
This is a method of displaying the residues of a protein in a simple
3,4,3,4 repeating pattern that emulates at a simple level the
arrangement of residues around an alpha helix. 
It is therefore easy to see patterns of amphipathicity that you may wish
to investigate in more detail by using displays such as pepwheel. 
You can specify which residues to mark up in squares, diamonds and
octagons. 
    Usage
    Command line arguments
    Input file format
pepnet reads any protein sequence USA.
    Output file format
    Data files
None.
    Notes
None.
    References
None.
    Warnings
None.
    Diagnostic Error Messages
None.
    Exit status
It exits with a status of 0.
    Known bugs
None.
    Author(s)
    History
    Target users
    Comments