|   | prosextract | 
| % prosextract Build the PROSITE motif database for use by patmatmotifs PROSITE database directory [.]: | 
Go to the output files for this example
The output files named after the prosite accession numbers can now also be seen in the prosite directory. This files are automatically created after prosextract is run.
| 
   Standard (Mandatory) qualifiers:
  [-prositedir]        directory  PROSITE database directory
   Additional (Optional) qualifiers: (none)
   Advanced (Unprompted) qualifiers: (none)
   Associated qualifiers: (none)
   General qualifiers:
   -auto               boolean    Turn off prompts
   -stdout             boolean    Write standard output
   -filter             boolean    Read standard input, write standard output
   -options            boolean    Prompt for standard and additional values
   -debug              boolean    Write debug output to program.dbg
   -verbose            boolean    Report some/full command line options
   -help               boolean    Report command line options. More
                                  information on associated and general
                                  qualifiers can be found with -help -verbose
   -warning            boolean    Report warnings
   -error              boolean    Report errors
   -fatal              boolean    Report fatal errors
   -die                boolean    Report dying program messages
 | 
| Standard (Mandatory) qualifiers | Allowed values | Default | |
|---|---|---|---|
| [-prositedir] (Parameter 1) | PROSITE database directory | Directory | |
| Additional (Optional) qualifiers | Allowed values | Default | |
| (none) | |||
| Advanced (Unprompted) qualifiers | Allowed values | Default | |
| (none) | |||
This directory contains output files.
| Program name | Description | 
|---|---|
| aaindexextract | Extract data from AAINDEX | 
| cutgextract | Extract data from CUTG | 
| printsextract | Extract data from PRINTS | 
| rebaseextract | Extract data from REBASE | 
| tfextract | Extract data from TRANSFAC |